| 1. |
Association of Genomewide Newborn DNA Methylation Patterns with Maternal Diet, Birth Weight and SNP Variation |
Ronald Adkins
Julia Krushkal
Fran Tylavsky
Grant Somes
|
| 2. |
Ciproxifan, an H3 Receptor Antagonist, Improves Memory in a Transgenic Mouse Model of Alzheimer’s Disease. |
Mark Bardgett
Molly S. Griffith
|
| 3. |
Comparative Functional Genomic Study of substrate specificity evolution of the SABATH family of methyltransferases in Plants |
Feng Chen
Nan Zhao
|
| 4. |
Development of Tools for the Automated Analysis of Spectra Generated by Tandem Mass Spec |
Dylan Storey
Sally Ellingson
Joe Hughes
Rick Weber
Nathan VerBerkmoes
|
| 5. |
High-throughput sequencing of the DBA/2J mouse genome |
Xusheng Wang
|
| 6. |
MAPSPLICE: Mapping RNA-seq Reads for Splice Discovery |
Kai Wang
|
| 7. |
Next Gen Sequencing of Ac. baumanii to Determine Antibiotic Resistance Genotypes |
Leon Dent
Dana Marshall
Robert Hulette
Siddharth Pratap
|
| 8. |
Predicting Co-Complexed Protein Pairs by Bayesian Additive Regression Trees |
Mingguang Shi
|
| 9. |
A Bayesian Change-point Algorithm for Detecting Copy Number Alteration |
Fridtjof Thomas
Stanley Pounds
|
| 10. |
A Multi-dimensional Evidence-based Candidate Gene Selection Approach for Complex Diseases |
Jingchun Sun
|
| 11. |
A systematic pathway-based analysis of GWAS data revealed susceptibility pathways to schizophrenia |
Peilin Jia
Zhongming Zhao
|
| 12. |
A two-step approach to qPCR experimental design and software for data analysis |
Huazhang Guo
Larry Tague
Ramesh Ray
Gabor Tigyi
|
| 13. |
Adaptive Sub-space Model for Eliminating Systemic Bias in Mining Biological Literature |
Fazle E. Faisal
Vida Abedi
Mohammed Yeasin
|
| 14. |
Analysis of equine protein-coding gene structure and expression by RNA-sequencing |
Stephen Coleman
Zheng Zeng
Jinze Liu
James N. MacLeod
|
| 15. |
Bioinformatic Analysis of Gene Regulation in the Metal-Reducing Bacterial Family Geobacteraceae |
Julia Krushkal
Ronald Adkins
Yanhua Qu1, Jeanette Peeples
Sreedhar Sontineni1,
Ching Leang3, Peter Brown3, Nelson Young3, Toshiyuki Ueki
Katy Juarez
Derek R. Lovley
|
| 16. |
Choosing Software Metrics for Software Quality Prediction |
Huanjing Wang
|
| 17. |
Comparative Phylogenetic and Functional Analysis of the Caffeoyl Coenzyme A 3-O-methyltransferase Family |
Xiaofeng Zhuang
Nan Zhao
Jingyu Lin
Feng Chen
|
| 18. |
Design of a DNA-Based Shift Register |
Christy Gearheart
Eric C. Rouchka
Benjamin Arazi
|
| 19. |
Detecting Gene Fusion with Paired End Reads |
Yin Hu
|
| 20. |
Determining the ratio of mass spectra assigned to a peptide in proteomic analyses of a natural microbial community |
Brian Erickson
Alison Russell
Nathan VerBerkmoes
Brian Dill
Manesh Shah
Robert Hettich
|
| 21. |
Developing Measures for Microbial Genome Assembly Quality Control |
Jeremy Jay
Rachel Adams
Jason Harris
Beth Johnson
Miriam Land
Loren Hauser
|
| 22. |
Discovering Disease-specific Biomarker Genes for Cancer Diagnosis and Prognosis |
Zhongming Zhao
Hung-Chung Huang
Siyuan Zheng
|
| 23. |
Do pathogenic bacteria encode more secreted proteins than their non-pathogenic relatives? |
Ramy Aziz
Ahmed A. Mahmoud
|
| 24. |
Enabling Proteomics-based identification of Human Cancer Variations |
Bing Zhang
Jing Li
Zeqiang Ma
Robbert J. C. Slebos
David L. Tabb
Daniel C. Liebler
|
| 25. |
Epigenetic control of signaling networks involved in interleukin-18-induced cardiac hypertrophy and its attenuation by pan-histone deacetylase inhibitors |
Gipsy Majumdar
Rajendra Raghow
|
| 26. |
Experimenting with Database Segmentation Size vs Time Performance for mpiBLAST on an IBM HS21 Blade Cluster |
Daniel Harris
Jerzy W. Jaromczyk
Christopher L. Schardl
|
| 27. |
Exploration of Plasminogen Activator Inhibitor-1 Binding with Vitronectin |
Cynthia B. Peterson
Letitia N. Olson
|
| 28. |
Graph algorithms for machine learning: a case-control study based on prostate cancer populations and high throughput transcriptomic data |
Gary Rogers
Pablo Moscato
Michael A. Langston
|
| 29. |
Growth hormone induces proliferation in the zebrafish inner ear |
Michael Smith
Huifang Sun
Julie B. Schuck
Shunsuke Moriyama
|
| 30. |
Identifying potential drugs that induce QT prolongation using electronic medical records |
Hua Xu
Mei Liu
Joshua Denny
Subramani Mani
Yukun Chen
Yong Hu
|
| 31. |
In silico Analysis of a Family of Peptidoglycan Deacetylases That Confer Lysozyme Resistance on Streptococci |
Ramy Aziz
|
| 32. |
In Vivo Assessment of EGFR and Src Targeted Therapy in Pancreatic Cancer |
Jason Herndon
Nagathihalli S. Nagaraj, Nipun B. Merchant
|
| 33. |
Inferring Gene Coexpression Networks for Low Dose Ionizing Radiation using Graph Theoretical Algorithms and Systems Genetics |
Michael Langston
Sudhir Naswa
Gary L. Rogers
Rachel M. Lynch
Elissa J. Chesler
Brynn H. Voy
Arnold M. Saxton
|
| 34. |
Integrating metagenomics with metaproteomics for characterization of the molecular activities of the human distal gut microbiome in healthy and Crohn’s Disease |
Alison Erickson
Brandi Cantarel
Nathan Verberkmoes
Manesh Shah
Claire Fraser-Liggett
Janet Jansson
Robert Hettich
|
| 35. |
Integrating neighbor clustering, coexpression clustering and subsystems analysis to define dynamic changes in regulatory networks associated with group A streptococcal sociomicrobiology and niche adaptation |
Malak Kotb
Ramy K. Aziz
Bruce J. Aronow
William L. Taylor
Sarah L. Rowe
Rita Kansal
Mark J. Walker
|
| 36. |
Knowledge Discovery from Literature: A Framework for Identification of Risk Factors for Complex Diseases |
Vida Abedi
Ramin Zand
Fazle Elahi Faisal
Mohammad Yeasin
|
| 37. |
Linking genotype to phenotype with Bayesian network modeling of Chlamydia infection |
Jesse Ziebarth
Bao LI
Isao Miyairi
Yan Cui
|
| 38. |
Molecular analysis of Trypanosoma cruzi isolates obtained from raccoons trapped in Warren and Barren counties of Kentucky |
Cheryl Davis
LiPeng Bi
Chad Groce
|
| 39. |
Peptide identification with Support Vector Machine Technique |
Andrew Link
Xinnan Niu
Zhonghang Xia
Haifeng Ma
Mu Zheng
|
| 40. |
Protein Structure Determination and Refinement via Short and Long Range Potentials |
Di Wu
|
| 41. |
Sequence and Annotation of the Wizard007 Mycobacterium Phage Genome |
Claire Rinehart
Ejike Anyanwu, Kaitlyn Cole, Karlee Driver
Anthony Falcone, Elizabeth Farnsworth, Benjamin Howard
Brittney Howard, Courtney Howard, Rodney King
Jordan Olberding, Mackenzie Perkins, Heidi Sayre
Tyler Scaff, Sarah Schrader
Prasanna Tamarapu Parthasarathy, Cynthia Tope
|
| 42. |
Serendipitous Discoveries in Microarray Analysis |
Sally Ellingson
Charles A. Phillips
Randy Glenn
Douglas Swanson
Thomas Ha
Daniel Goldowitz
Michael A. Langston
|
| 43. |
Significance Analysis of Microarrays using Literature |
Lijing Xu
Kevin E. Heinrich
E. Olusegun George
Michael W. Berry
Ramin Homayouni
|
| 44. |
Slim-Prim: An Integrated Data System for Clinical and Translational Research |
Teeradache Viangteeravat
Ian Brooks
Somchan Vuthipadadon
|
| 45. |
SNPlotz: A generic genome plot tool for SNP association studies |
Zhiliang Hu
|
| 46. |
Stage Classification of Drosophila embroys using orientation histogram. |
Gopichand Nutakki
Qi Li
|
| 47. |
Statistical Analysis of Multiple Significance Test Methods for Differential Proteomics |
Xiang Zhang
Bing Wang
Mohamed Fahim
Jun Zhang
Xinmin Yin
Eric Rochika
|
| 48. |
Testing Gene-Environment Interactions in Family-Based Genetic Association Studies:
A Causal Inference Approach to Adjust for Ascertainment-induced Bias |
David Fardo
Yan Huang
|
| 49. |
The HHMI National Genomics Research Initiative at Western Kentucky University |
Rodney King
Claire Rinehart
Prasanna Tamarapu Parthasarathy
|
| 50. |
Understanding molecular recognition and epitope prediction from Information Theoretic approach
|
Indranil Mitra
Yan Cui
|
| 51. |
WebGestalt2: an updated and expanded version of the Web-based Gene Set Analysis Toolkit |
Bing Zhang
Dexter Duncan
|
| 52. |
X-test, an Innovative Statistical Significance Test Method for Differential Proteomics |
Xiang Zhang
|